In my opinion, as a new reloader you have quite a number of things going wrong for you.
First of all, I know you have a Lee manual, but your post leads me to believe you have not actually read ALL of the great information in that book - or maybe you just skimmed it in your hurry to begin reloading? You really need to sit down and carefully re-read the book - ALL of it, not just parts that you think might be interesting or apply specifically to your intended cartridges.
Next, I personally do not believe any new loader should be using a progressive press - ANY progressive press. And especially not a Lee Load Master, which has a reputation of being finicky and hard to use. I personally like Lee and do much reloading on both the Pro 1000 and Classic Turret presses, which I love - so I am not bashing Lee in any way. I also have not personally used a Load Master, but I feel very strongly that you are ABSOLUTELY WRONG to try and learn to reload using any of those presses. Others are free to, and certainly will disagree, but in my opinion, the ONLY thing a new reloader should be using is a single stage press.
More importantly, you are starting with a small little cartridge that makes things more difficult. This is not terrible in and of itself, but you would be far better off with something like a .38 Spl or .44 Spl to learn on. If you only own 9mm, well, I guess that will have to do.
Next, 700-X is a very poor choice for a new reloader when combined with a dinky little cartridge. Once again let me stress that I personally LOVE 700-X, so not bashing it - it is an almost perfect powder for light to mid-range handgun loads in all respects except one: it is a coarse flake powder and can give inconsistent throws out of some measuring equipment, ESPECIALLY for a new reloader that does not already have good processes and techniques developed along with an understanding of the issues involved. If you will read the note at the bottom of the powder capacity chart that came with whatever Lee auto powder measure you are using, you should see a caution about using course flake powders in smaller cavities - they put that there for a reason.
You didn't tell us what charge you are trying for, but my guess, based on the 125g lead bullet, is that you are around 3.0g 700-X. If so, you must understand that you are right at the bottom of the range where you can expect consistent powder throws from most measures with 700-X. the variations that you will see are not dangerous, UNLESS you happen to have a problem with powder bridging and do not catch it (one of the BIGGEST reasons you should NOT be using a progressive press at this point). 700-X charges are usually only a very small part of the case capacity, which does allow a catastrophic double charge if you make that error. I do not personally load the 9mm, so I cannot say for sure that can happen with the toy cartridge, but I caution you nonetheless.
Finally, you say you are using the Lee FCD - you will find a big split in opinions about using the FCD at all. Some of us feel it is best avoided unless you have a specific problem you need to address with it, other do like to seat and crimp in different stages. However, I think the majority of knowledgeable loaders will recommend that you NOT use the FCD with lead bullets, since it can easily swage them down to a point where they do not properly fit the bore.
I know you have already purchased all this fancy equipment and want to use it, but I urge you to step back and think about it. Everything you have is good stuff, and none of your money has been wasted. But you really should also have a basic single stage press and some loading blocks to start with until you develop those all important good habits and processes. Good luck and do try to load safe. I commend you for at least coming on this forum and asking your questions!