The previous combination apparently worked fine, right? All that changed was mounting a free float to the upper. The free float itself has no apparent affect on the pin fit, other than having the new barrel nut too close to the front eyes.
After that, how much torque was used, and what kind of fixture? It's hard to imagine twisting the pin lugs so much that they are no longer parallel, but it is aluminum, not indestructium. If you could insert long rods in the pinholes, it would pretty quickly show how much out of parallel they are, should that be possible.
As for being hard to assemble, my new AR is that tight. I DO beat the pins in with a screwdriver handle. Each fits it's hole very well, the overall Center to Center spacing is a few thousandths too close. It happens with lowers and uppers made 1,000 miles apart.
Try each pin separately, one is usually worse than the other, from there you can futher diagnose what happened. Worst case is breaking something, of course, but if they will go together, then shoot it for 10,000 rounds and keep it lubed. It will loosen up long before you really need to tear it down and clean it.