This is the real danger of leaving a shotgun magazine loaded long term. Most people worry about the magazine spring weakening.
The real problem is that the constant tension on the shells can cause them to start to collapse and develop bulges in the case.
This is worse in shotguns with magazine extensions and guns carried upright in a police rack where the bouncing can cause faster collapsing.
This also happens rather quickly with some brands of shells, especially foreign brands who seem to use weaker plastics.
However, this can happen with any brand of shells.
If the bulging isn't too bad, they can be safely shot, but chambering and extraction may be a problem.
I'd suggest trying another brand of shells, especially a premium brand American made shell by Remington, Winchester, or Federal.
Why a single shot shotgun would bulge the shells is a mystery, unless you are having to use excessive force to get them to chamber.
Inspect the chamber for corrosion, and buy and use a shotgun chamber brush to thoroughly scrub the chamber.
Also, make sure you aren't loading longer shells in a shorter chambered gun.
As example, loading 3" shells in a barrel made for 2 3/4" shells.