When I get a lot of once fired brass that has been capped and sized, or new brass, I do the same routine.
I uniform the primer pockets, and then I caliper the cases...pick a maximum length threshold (that is no longer than the max) and trim the ones that need it to the average length of the rest. That trimming trick saves time.
That description above is for bulk reloading. If I'm making a bench rest tack driver load, or development of a new load, I trim the cases to a specific length.....also if you are crimping you need to trim.
But like I said, if precision isn't that important, trim anything too long, prime em, charge em, seat a bullet ant let her rip.
As far as de-formed necks, don't worry about it. If they look off, re size, if they take a bullet easily, don't worry about it.