I know what you mean about the frustrating part Jack. I think I'm actually in the GT archives for a "Low and Left" thread where I swore I was doing everthing right, and found out I wasn't
Heck I even E-mailed Chuck Taylor and told him my ills with his beloved Glock as compared to my 1911. His reply was basically transition takes time.
Your right about your index finger being almost lined up with the bore if you extended it out. This low axis actually makes the Glock one of the few guns that points naturally for me. You can press the trigger straight back from this position, but it's different and takes time to drill into yourself.
Frustrating part for me was that I had shot for years (and pretty well) and now people were telling me I was doing stuff wrong that I knew was right. I eventually found that strictly in my opinion as much as I love the Glock it magnifies errors greatly.
Stuff you can get by with on a 1911 or revolver for years just don't cut with the Glock. I don't know if it's the light frame or the trigger or a combo, but it's just what I found. How hard you grip, trigger finger placement, the "pressing straight" back as opposed to pulling the trigger all seemed to have a much greater effect on the groups with the glock than other guns.
What helped me the most was concentrating on:
1, Pressing trigger straight back as mentioned.
2, Grip tension, 40% gun hand 60% support hand.
3, Follow through, keeping the sights on target after the shot and not dropping the barrel unconciously to see where I hit (OK thats a general tip
)
4, Finger position on the trigger, Made a huge difference as to point of impact for me as to "how much finger" I was using.
5, Going from a 40 to 9mm
Seriously I love Glocks to death for a lot of reasons too long to get into here that may or may not be applicable to you at all. If you don't like it and shoot better with something else, hey more power to you. There are a sea of great sidearms out there. But I work with a lot of police who have no choice as to what they carry, and from that have come to believe you can overcome about anything to become a great shot with any quality gun that reasonably fits you (you can reach the trigger etc.).
Whether the Glocks advantages (and yes it's disadvantages) are worth your effort in this matter is entirely up to you. Just didn't want to see you give up on a gun and maybe lose some money on the deal because of the "bore axis" thing the instructor told you about which IMHO basically hooey.
Best of luck, and hey worst case scenario check with my bud AlaDan who will steer you well away from that Glock and to a Sig 220
Regards, Blueduck